IL_4UJD_100
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 4UJD|1|A2|A|3754, 4UJD|1|A2|C|3760, 4UJD|1|A2|C|3779
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_100 not in the Motif Atlas
- Homologous match to IL_5TBW_090
- Geometric discrepancy: 0.3201
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4UJD|1|A2|C|3750
4UJD|1|A2|C|3751
4UJD|1|A2|A|3752
4UJD|1|A2|A|3753
4UJD|1|A2|A|3754
4UJD|1|A2|U|3755
4UJD|1|A2|G|3756
4UJD|1|A2|C|3757
4UJD|1|A2|C|3758
4UJD|1|A2|U|3759
4UJD|1|A2|C|3760
4UJD|1|A2|G|3761
*
4UJD|1|A2|C|3777
4UJD|1|A2|G|3778
4UJD|1|A2|C|3779
4UJD|1|A2|G|3780
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain An
- 60S RIBOSOMAL PROTEIN L41
- Chain BA
- Transfer RNA; tRNA
- Chain BB
- EIF5B
- Chain C1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: