IL_4UJD_129

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

4UJD|1|A2|U|4594, 4UJD|1|A2|U|4596

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_129 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1999

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4UJD|1|A2|U|4592
4UJD|1|A2|G|4593
4UJD|1|A2|U|4594
4UJD|1|A2|A|4595
4UJD|1|A2|U|4596
4UJD|1|A2|G|4597
*
4UJD|1|A2|C|4622
4UJD|1|A2|G|4623
4UJD|1|A2|A|4624
4UJD|1|A2|A|4625
4UJD|1|A2|G|4626

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AW

60S RIBOSOMAL PROTEIN L24

Chain Ad

60S RIBOSOMAL PROTEIN L31