IL_4UJD_139

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_139 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2517

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4UJD|1|A2|U|4840
4UJD|1|A2|C|4841
4UJD|1|A2|C|4842
4UJD|1|A2|U|4843
4UJD|1|A2|G|4844
*
4UJD|1|A2|C|4885
4UJD|1|A2|G|4886
4UJD|1|A2|U|4887
4UJD|1|A2|C|4888
4UJD|1|A2|A|4889

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AE

60S RIBOSOMAL PROTEIN L6

Chain AM

60S RIBOSOMAL PROTEIN L14

Chain AO

60S RIBOSOMAL PROTEIN L13A