IL_4UJD_149

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_149 not in the Motif Atlas

Homologous match to IL_5TBW_135

Geometric discrepancy: 0.1486

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4UJD|1|A2|A|4969
4UJD|1|A2|G|4970
4UJD|1|A2|A|4971
4UJD|1|A2|G|4972
*
4UJD|1|A2|C|4987
4UJD|1|A2|G|4988
4UJD|1|A2|A|4989
4UJD|1|A2|U|4990

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain CI

40S RIBOSOMAL PROTEIN ES8