IL_4UJD_150
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 4UJD|1|A3|G|94
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_150 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.3842
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4UJD|1|A3|U|64
4UJD|1|A3|A|65
4UJD|1|A3|A|66
4UJD|1|A3|U|67
*
4UJD|1|A3|A|91
4UJD|1|A3|U|92
4UJD|1|A3|C|93
4UJD|1|A3|G|94
4UJD|1|A3|A|95
Current chains
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S RIBOSOMAL PROTEIN L26
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
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