IL_4UJD_153

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_153 not in the Motif Atlas

Geometric match to IL_8C3A_142

Geometric discrepancy: 0.2744

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4UJD|1|A4|C|15
4UJD|1|A4|A|16
*
4UJD|1|A4|U|62
4UJD|1|A4|C|63
4UJD|1|A4|G|64

Current chains

Chain A4

5S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain AJ

60S RIBOSOMAL PROTEIN L11