IL_4UJD_157
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4UJD|1|A4|U|84
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_157 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1583
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4UJD|1|A4|G|82
4UJD|1|A4|A|83
4UJD|1|A4|U|84
4UJD|1|A4|G|85
*
4UJD|1|A4|C|92
4UJD|1|A4|G|93
4UJD|1|A4|C|94
Current chains
- Chain A4
- 5S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain AI
- 60S RIBOSOMAL PROTEIN L10
- Chain AS
- 60S RIBOSOMAL PROTEIN L18A
Coloring options: