IL_4UJD_181

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

4UJD|1|C1|U|367, 4UJD|1|C1|U|368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_181 not in the Motif Atlas

Geometric match to IL_4ERD_001

Geometric discrepancy: 0.339

The information below is about IL_4ERD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4UJD|1|C1|U|366
4UJD|1|C1|U|367
4UJD|1|C1|U|368
4UJD|1|C1|C|369
4UJD|1|C1|G|370
4UJD|1|C1|A|371
*
4UJD|1|C1|U|393
4UJD|1|C1|G|394

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain CI

40S RIBOSOMAL PROTEIN ES8

Chain CL

40S RIBOSOMAL PROTEIN US17