IL_4UJD_203

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_203 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2968

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4UJD|1|C1|G|925
4UJD|1|C1|A|926
4UJD|1|C1|C|927
*
4UJD|1|C1|G|1014
4UJD|1|C1|U|1015
4UJD|1|C1|U|1016
4UJD|1|C1|U|1017

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CN

40S RIBOSOMAL PROTEIN ES15

Chain CW

40S RIBOSOMAL PROTEIN US8

Chain Cb

40S RIBOSOMAL PROTEIN ES27