IL_4UJD_211
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_211 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.2394
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4UJD|1|C1|C|1098
4UJD|1|C1|G|1099
4UJD|1|C1|A|1100
4UJD|1|C1|U|1101
*
4UJD|1|C1|G|1131
4UJD|1|C1|C|1132
4UJD|1|C1|A|1133
4UJD|1|C1|G|1134
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CA
- 40S RIBOSOMAL PROTEIN US2
- Chain CB
- 40S RIBOSOMAL PROTEIN ES1
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
- Chain Ca
- 40S RIBOSOMAL PROTEIN ES26
Coloring options: