IL_4UJD_214

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_214 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1854

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4UJD|1|C1|G|1168
4UJD|1|C1|G|1169
4UJD|1|C1|A|1170
4UJD|1|C1|G|1171
4UJD|1|C1|U|1172
4UJD|1|C1|A|1173
4UJD|1|C1|U|1174
4UJD|1|C1|G|1175
*
4UJD|1|C1|U|1186
4UJD|1|C1|G|1187
4UJD|1|C1|A|1188
4UJD|1|C1|A|1189
4UJD|1|C1|A|1190
4UJD|1|C1|C|1191

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain An

60S RIBOSOMAL PROTEIN L41

Chain CX

40S RIBOSOMAL PROTEIN US12