IL_4UJD_237
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 4UJD|1|C1|C|1701, 4UJD|1|C1|A|1835
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_237 not in the Motif Atlas
- Geometric match to IL_4V88_463
- Geometric discrepancy: 0.2487
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJD|1|C1|C|1700
4UJD|1|C1|C|1701
4UJD|1|C1|G|1702
*
4UJD|1|C1|C|1833
4UJD|1|C1|A|1834
4UJD|1|C1|A|1835
4UJD|1|C1|G|1836
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain An
- 60S RIBOSOMAL PROTEIN L41
- Chain BA
- Transfer RNA; tRNA
- Chain BC
- Internal ribosome entry site; IRES
- Chain CO
- 40S RIBOSOMAL PROTEIN ES11
- Chain Ca
- 40S RIBOSOMAL PROTEIN ES26
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