IL_4UJD_245
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_245 not in the Motif Atlas
- Homologous match to IL_4V88_471
- Geometric discrepancy: 0.1417
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
4UJD|1|C1|U|1733
4UJD|1|C1|G|1734
4UJD|1|C1|A|1735
4UJD|1|C1|G|1736
*
4UJD|1|C1|C|1798
4UJD|1|C1|G|1799
4UJD|1|C1|A|1800
4UJD|1|C1|A|1801
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain AV
- 60S RIBOSOMAL PROTEIN L23
- Chain AW
- 60S RIBOSOMAL PROTEIN L24
- Chain CG
- 40S RIBOSOMAL PROTEIN ES6
- Chain CI
- 40S RIBOSOMAL PROTEIN ES8
Coloring options: