IL_4UJD_255

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCGGGUCCG*CGC

Length

12 nucleotides

Bulged bases

4UJD|1|A2|G|474, 4UJD|1|A2|U|475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_255 not in the Motif Atlas

Geometric match to IL_4YHW_002

Geometric discrepancy: 0.2619

The information below is about IL_4YHW_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4UJD|1|A2|G|470
4UJD|1|A2|C|471
4UJD|1|A2|G|472
4UJD|1|A2|G|473
4UJD|1|A2|G|474
4UJD|1|A2|U|475
4UJD|1|A2|C|476
4UJD|1|A2|C|477
4UJD|1|A2|G|478
*
4UJD|1|A2|C|665
4UJD|1|A2|G|666
4UJD|1|A2|C|667

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain At

60S RIBOSOMAL PROTEIN L28