IL_4UJD_268

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_268 not in the Motif Atlas

Homologous match to IL_8P9A_270

Geometric discrepancy: 0.2391

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4UJD|1|A2|A|1728
4UJD|1|A2|G|1729
4UJD|1|A2|A|1730
*
4UJD|1|A2|U|1758
4UJD|1|A2|A|1759
4UJD|1|A2|U|1760

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AI

60S RIBOSOMAL PROTEIN L10