IL_4UJD_275

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAGU*GCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_275 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3323

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4UJD|1|A2|G|2518
4UJD|1|A2|G|2519
4UJD|1|A2|A|2520
4UJD|1|A2|G|2521
4UJD|1|A2|U|2522
*
4UJD|1|A2|G|2748
4UJD|1|A2|C|2749
4UJD|1|A2|G|2750
4UJD|1|A2|C|2751
4UJD|1|A2|C|2752

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ag

60S RIBOSOMAL PROTEIN L34

Chain Ak

60S RIBOSOMAL PROTEIN L38