IL_4UJD_278
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_278 not in the Motif Atlas
- Homologous match to IL_8P9A_305
- Geometric discrepancy: 0.1343
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
4UJD|1|A2|G|2824
4UJD|1|A2|G|2825
4UJD|1|A2|A|2826
4UJD|1|A2|A|2827
4UJD|1|A2|G|2828
4UJD|1|A2|U|2829
4UJD|1|A2|C|2830
4UJD|1|A2|G|2831
4UJD|1|A2|G|2832
*
4UJD|1|A2|C|3806
4UJD|1|A2|U|3807
4UJD|1|A2|G|3808
4UJD|1|A2|U|3809
4UJD|1|A2|C|3810
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AB
- 60S RIBOSOMAL PROTEIN L3
- Chain AV
- 60S RIBOSOMAL PROTEIN L23
Coloring options: