IL_4UJD_289

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4UJD|1|A2|A|4668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_289 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.208

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4UJD|1|A2|A|4641
4UJD|1|A2|U|4642
4UJD|1|A2|U|4643
4UJD|1|A2|A|4644
4UJD|1|A2|U|4645
*
4UJD|1|A2|A|4665
4UJD|1|A2|G|4666
4UJD|1|A2|A|4667
4UJD|1|A2|A|4668
4UJD|1|A2|U|4669

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain AO

60S RIBOSOMAL PROTEIN L13A

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40