IL_4UJD_292

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGUC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_292 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2131

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UJD|1|A2|G|4727
4UJD|1|A2|G|4728
4UJD|1|A2|U|4729
4UJD|1|A2|C|4730
*
4UJD|1|A2|G|4818
4UJD|1|A2|U|4819
4UJD|1|A2|C|4820
4UJD|1|A2|C|4821

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain AM

60S RIBOSOMAL PROTEIN L14

Chain AO

60S RIBOSOMAL PROTEIN L13A