IL_4UJD_316

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_316 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1846

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4UJD|1|C1|C|1742
4UJD|1|C1|G|1743
4UJD|1|C1|G|1744
4UJD|1|C1|A|1745
4UJD|1|C1|U|1746
*
4UJD|1|C1|A|1788
4UJD|1|C1|G|1789
4UJD|1|C1|A|1790
4UJD|1|C1|A|1791
4UJD|1|C1|G|1792

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain AW

60S RIBOSOMAL PROTEIN L24

Chain CG

40S RIBOSOMAL PROTEIN ES6

Chain CI

40S RIBOSOMAL PROTEIN ES8