IL_4UJE_015

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGGGUCCGG*CCG

Length

12 nucleotides

Bulged bases

4UJE|1|A2|G|472, 4UJE|1|A2|U|475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_015 not in the Motif Atlas

Geometric match to IL_4V8Q_188

Geometric discrepancy: 0.2387

The information below is about IL_4V8Q_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4UJE|1|A2|C|471
4UJE|1|A2|G|472
4UJE|1|A2|G|473
4UJE|1|A2|G|474
4UJE|1|A2|U|475
4UJE|1|A2|C|476
4UJE|1|A2|C|477
4UJE|1|A2|G|478
4UJE|1|A2|G|479
*
4UJE|1|A2|C|664
4UJE|1|A2|C|665
4UJE|1|A2|G|666

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain Ct

60S RIBOSOMAL PROTEIN L28