IL_4UJE_064
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4UJE|1|A2|C|1913, 4UJE|1|A2|A|2019
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJE_064 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2327
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4UJE|1|A2|G|1911
4UJE|1|A2|A|1912
4UJE|1|A2|C|1913
4UJE|1|A2|C|1914
4UJE|1|A2|C|1915
4UJE|1|A2|C|1916
4UJE|1|A2|A|1917
4UJE|1|A2|G|1918
4UJE|1|A2|A|1919
4UJE|1|A2|A|1920
4UJE|1|A2|A|1921
4UJE|1|A2|A|1922
*
4UJE|1|A2|U|2016
4UJE|1|A2|G|2017
4UJE|1|A2|A|2018
4UJE|1|A2|A|2019
4UJE|1|A2|A|2020
4UJE|1|A2|A|2021
4UJE|1|A2|U|2022
4UJE|1|A2|G|2023
4UJE|1|A2|G|2024
4UJE|1|A2|A|2025
4UJE|1|A2|U|2026
4UJE|1|A2|G|2027
4UJE|1|A2|G|2028
4UJE|1|A2|C|2029
4UJE|1|A2|G|2030
4UJE|1|A2|C|2031
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain CB
- 60S RIBOSOMAL PROTEIN L3
- Chain CI
- 60S RIBOSOMAL PROTEIN L10
- Chain CO
- 60S RIBOSOMAL PROTEIN L13A
- Chain Cf
- 60S RIBOSOMAL PROTEIN L35A
- Chain Cm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
Coloring options: