IL_4UJE_071

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUAGUAGC*GCGAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_071 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.2912

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4UJE|1|A2|G|2335
4UJE|1|A2|U|2336
4UJE|1|A2|A|2337
4UJE|1|A2|G|2338
4UJE|1|A2|U|2339
4UJE|1|A2|A|2340
4UJE|1|A2|G|2341
4UJE|1|A2|C|2342
*
4UJE|1|A2|G|3826
4UJE|1|A2|C|3827
4UJE|1|A2|G|3828
4UJE|1|A2|A|3829
4UJE|1|A2|A|3830
4UJE|1|A2|A|3831
4UJE|1|A2|C|3832

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CP

60S RIBOSOMAL PROTEIN L17