IL_4UJE_073

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

4UJE|1|A2|A|2405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_073 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.2871

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4UJE|1|A2|U|2392
4UJE|1|A2|G|2393
4UJE|1|A2|A|2394
4UJE|1|A2|A|2395
4UJE|1|A2|C|2396
*
4UJE|1|A2|G|2404
4UJE|1|A2|A|2405
4UJE|1|A2|A|2406

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CP

60S RIBOSOMAL PROTEIN L17

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain Cl

60S RIBOSOMAL PROTEIN L39