IL_4UJE_092

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4UJE|1|A2|A|3632, 4UJE|1|A2|U|3648, 4UJE|1|A2|C|3652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_092 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1755

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4UJE|1|A2|C|3629
4UJE|1|A2|G|3630
4UJE|1|A2|A|3631
4UJE|1|A2|A|3632
4UJE|1|A2|G|3633
4UJE|1|A2|G|3634
*
4UJE|1|A2|U|3646
4UJE|1|A2|G|3647
4UJE|1|A2|U|3648
4UJE|1|A2|U|3649
4UJE|1|A2|G|3650
4UJE|1|A2|A|3651
4UJE|1|A2|C|3652
4UJE|1|A2|G|3653

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain Cp

60S RIBOSOMAL PROTEIN L37A