IL_4UJE_100

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4UJE|1|A2|A|3754, 4UJE|1|A2|C|3760, 4UJE|1|A2|C|3779

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_100 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.3201

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4UJE|1|A2|C|3750
4UJE|1|A2|C|3751
4UJE|1|A2|A|3752
4UJE|1|A2|A|3753
4UJE|1|A2|A|3754
4UJE|1|A2|U|3755
4UJE|1|A2|G|3756
4UJE|1|A2|C|3757
4UJE|1|A2|C|3758
4UJE|1|A2|U|3759
4UJE|1|A2|C|3760
4UJE|1|A2|G|3761
*
4UJE|1|A2|C|3777
4UJE|1|A2|G|3778
4UJE|1|A2|C|3779
4UJE|1|A2|G|3780

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S RIBOSOMAL PROTEIN L41