IL_4UJE_121

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4UJE|1|A2|G|4482, 4UJE|1|A2|A|4483

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_121 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1982

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4UJE|1|A2|C|4416
4UJE|1|A2|U|4417
4UJE|1|A2|C|4418
*
4UJE|1|A2|G|4480
4UJE|1|A2|U|4481
4UJE|1|A2|G|4482
4UJE|1|A2|A|4483
4UJE|1|A2|G|4484

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain CV

60S RIBOSOMAL PROTEIN L23