IL_4UJE_124

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

4UJE|1|A2|A|4448

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_124 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3883

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4UJE|1|A2|U|4428
4UJE|1|A2|U|4429
4UJE|1|A2|G|4430
*
4UJE|1|A2|C|4445
4UJE|1|A2|C|4446
4UJE|1|A2|A|4447
4UJE|1|A2|A|4448
4UJE|1|A2|G|4449

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CH

60S RIBOSOMAL PROTEIN L9

Chain CO

60S RIBOSOMAL PROTEIN L13A

Chain Cm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40