IL_4UJE_140

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_140 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2516

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4UJE|1|A2|U|4840
4UJE|1|A2|C|4841
4UJE|1|A2|C|4842
4UJE|1|A2|U|4843
4UJE|1|A2|G|4844
*
4UJE|1|A2|C|4885
4UJE|1|A2|G|4886
4UJE|1|A2|U|4887
4UJE|1|A2|C|4888
4UJE|1|A2|A|4889

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CE

60S RIBOSOMAL PROTEIN L6

Chain CM

60S RIBOSOMAL PROTEIN L14

Chain CO

60S RIBOSOMAL PROTEIN L13A