IL_4UJE_191

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUUG*CUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_191 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2917

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4UJE|1|B1|U|804
4UJE|1|B1|U|805
4UJE|1|B1|U|806
4UJE|1|B1|G|807
*
4UJE|1|B1|C|856
4UJE|1|B1|U|857
4UJE|1|B1|A|858
4UJE|1|B1|G|859

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BE

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain BL

40S RIBOSOMAL PROTEIN S11

Chain BW

40S RIBOSOMAL PROTEIN S15A