IL_4UJE_204

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_204 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.3029

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

4UJE|1|B1|U|1101
4UJE|1|B1|G|1102
4UJE|1|B1|C|1103
*
4UJE|1|B1|G|1129
4UJE|1|B1|G|1130
4UJE|1|B1|G|1131

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BB

40S RIBOSOMAL PROTEIN S3A

Chain BN

40S RIBOSOMAL PROTEIN S13

Chain Bb

40S RIBOSOMAL PROTEIN S27