IL_4UJE_206

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_206 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1854

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4UJE|1|B1|G|1168
4UJE|1|B1|G|1169
4UJE|1|B1|A|1170
4UJE|1|B1|G|1171
4UJE|1|B1|U|1172
4UJE|1|B1|A|1173
4UJE|1|B1|U|1174
4UJE|1|B1|G|1175
*
4UJE|1|B1|U|1186
4UJE|1|B1|G|1187
4UJE|1|B1|A|1188
4UJE|1|B1|A|1189
4UJE|1|B1|A|1190
4UJE|1|B1|C|1191

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BX

40S RIBOSOMAL PROTEIN S23

Chain Cn

60S RIBOSOMAL PROTEIN L41