IL_4UJE_214

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_214 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.3372

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

4UJE|1|B1|A|1291
4UJE|1|B1|C|1292
4UJE|1|B1|A|1293
*
4UJE|1|B1|U|1306
4UJE|1|B1|U|1307
4UJE|1|B1|U|1308

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BP

40S RIBOSOMAL PROTEIN S15

Chain Bd

40S RIBOSOMAL PROTEIN S29

Chain Bf

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A