IL_4UJE_225

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_225 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1856

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4UJE|1|B1|A|1537
4UJE|1|B1|C|1538
4UJE|1|B1|U|1539
*
4UJE|1|B1|A|1594
4UJE|1|B1|U|1595
4UJE|1|B1|U|1596

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BF

40S RIBOSOMAL PROTEIN S5

Chain BQ

40S RIBOSOMAL PROTEIN S16

Chain BS

40S RIBOSOMAL PROTEIN S18

Chain BT

40S RIBOSOMAL PROTEIN S19

Chain BZ

40S RIBOSOMAL PROTEIN S25