IL_4UJE_229

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4UJE|1|B1|C|1701, 4UJE|1|B1|A|1835

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_229 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.2487

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4UJE|1|B1|C|1700
4UJE|1|B1|C|1701
4UJE|1|B1|G|1702
*
4UJE|1|B1|C|1833
4UJE|1|B1|A|1834
4UJE|1|B1|A|1835
4UJE|1|B1|G|1836

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

Messenger RNA

Chain BO

40S RIBOSOMAL PROTEIN S14

Chain Ba

40S RIBOSOMAL PROTEIN S26

Chain Cn

60S RIBOSOMAL PROTEIN L41