IL_4UJE_294

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_294 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4526

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4UJE|1|B1|G|924
4UJE|1|B1|G|925
4UJE|1|B1|A|926
*
4UJE|1|B1|U|1015
4UJE|1|B1|U|1016
4UJE|1|B1|U|1017
4UJE|1|B1|U|1018

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BN

40S RIBOSOMAL PROTEIN S13

Chain BW

40S RIBOSOMAL PROTEIN S15A

Chain Bb

40S RIBOSOMAL PROTEIN S27