IL_4UY8_056

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4UY8|1|A|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_056 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.101

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4UY8|1|A|G|1432
4UY8|1|A|A|1433
4UY8|1|A|A|1434
4UY8|1|A|G|1435
*
4UY8|1|A|C|1557
4UY8|1|A|C|1558
4UY8|1|A|U|1559
4UY8|1|A|G|1560
4UY8|1|A|C|1561

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2