IL_4UY8_117
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UY8_117 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0523
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4UY8|1|B|C|71
4UY8|1|B|G|72
4UY8|1|B|A|73
4UY8|1|B|U|74
4UY8|1|B|G|75
4UY8|1|B|G|76
4UY8|1|B|U|77
4UY8|1|B|A|78
4UY8|1|B|G|79
*
4UY8|1|B|C|97
4UY8|1|B|G|98
4UY8|1|B|A|99
4UY8|1|B|G|100
4UY8|1|B|A|101
4UY8|1|B|G|102
4UY8|1|B|U|103
4UY8|1|B|A|104
4UY8|1|B|G|105
Current chains
- Chain B
- RRNA-5S RIBOSOMAL RNA
Nearby chains
- Chain 8
- 50S RIBOSOMAL PROTEIN L25
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S RIBOSOMAL PROTEIN L16
- Chain W
- 50S RIBOSOMAL PROTEIN L27
Coloring options: