IL_4UY8_122

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_122 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0581

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|G|1666
4UY8|1|A|G|1667
4UY8|1|A|A|1668
4UY8|1|A|A|1669
4UY8|1|A|C|1670
4UY8|1|A|U|1671
4UY8|1|A|A|1672
4UY8|1|A|G|1673
4UY8|1|A|G|1674
*
4UY8|1|A|C|1990
4UY8|1|A|U|1991
4UY8|1|A|G|1992
4UY8|1|A|U|1993
4UY8|1|A|C|1994

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14