IL_4UY8_124

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_124 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0683

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4UY8|1|A|U|1851
4UY8|1|A|U|1852
4UY8|1|A|A|1853
4UY8|1|A|A|1854
4UY8|1|A|U|1855
4UY8|1|A|U|1856
4UY8|1|A|G|1857
4UY8|1|A|A|1858
4UY8|1|A|U|1859
4UY8|1|A|G|1860
*
4UY8|1|A|U|1882
4UY8|1|A|U|1883
4UY8|1|A|G|1884
4UY8|1|A|A|1885
4UY8|1|A|U|1886
4UY8|1|A|C|1887
4UY8|1|A|G|1888
4UY8|1|A|A|1889
4UY8|1|A|A|1890
4UY8|1|A|G|1891

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains