IL_4V19_007

3D structure

PDB id

4V19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V19_007 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1606

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V19|1|A|A|213
4V19|1|A|A|214
4V19|1|A|C|215
*
4V19|1|A|G|229
4V19|1|A|C|230
4V19|1|A|U|231

Current chains

Chain A

MITORIBOSOMAL 16S RRNA

Nearby chains

Chain 8

MITORIBOSOMAL PROTEIN BL35M, MRPL35

Chain F

MITORIBOSOMAL PROTEIN UL4M, MRPL4

Chain P

MITORIBOSOMAL PROTEIN UL15M, MRPL15