IL_4V49_012

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V49|1|AA|U|244, 4V49|1|AA|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_012 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1705

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V49|1|AA|C|242
4V49|1|AA|A|243
4V49|1|AA|U|244
4V49|1|AA|C|245
4V49|1|AA|A|246
4V49|1|AA|G|247
*
4V49|1|AA|C|277
4V49|1|AA|G|278
4V49|1|AA|A|279
4V49|1|AA|C|280
4V49|1|AA|G|281
4V49|1|AA|A|282
4V49|1|AA|C|283
4V49|1|AA|G|284

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17