IL_4V49_030

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V49|1|AA|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_030 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0593

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V49|1|AA|G|662
4V49|1|AA|A|663
4V49|1|AA|G|664
4V49|1|AA|A|665
4V49|1|AA|G|666
*
4V49|1|AA|U|740
4V49|1|AA|G|741
4V49|1|AA|G|742
4V49|1|AA|U|743

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18