IL_4V49_032

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V49|1|AA|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_032 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1211

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V49|1|AA|G|683
4V49|1|AA|A|684
4V49|1|AA|G|685
4V49|1|AA|U|686
4V49|1|AA|A|687
4V49|1|AA|G|688
*
4V49|1|AA|C|699
4V49|1|AA|G|700
4V49|1|AA|C|701
4V49|1|AA|A|702
4V49|1|AA|G|703
4V49|1|AA|A|704
4V49|1|AA|U|705
4V49|1|AA|A|706
4V49|1|AA|C|707

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain B0

Large subunit ribosomal RNA; LSU rRNA