3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
4V49|1|B0|G|814, 4V49|1|B0|G|818
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V49_076 not in the Motif Atlas
Geometric match to IL_7A0S_015
Geometric discrepancy: 0.3619
The information below is about IL_7A0S_015
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

4V49|1|B0|G|687
4V49|1|B0|A|688
4V49|1|B0|A|689
4V49|1|B0|A|690
4V49|1|B0|C|691
*
4V49|1|B0|G|812
4V49|1|B0|A|813
4V49|1|B0|G|814
4V49|1|B0|A|815
4V49|1|B0|U|816
4V49|1|B0|A|817
4V49|1|B0|G|818
4V49|1|B0|C|819

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BC
50S ribosomal protein L4
Chain BJ
50S ribosomal protein L15

Coloring options:


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