IL_4V49_093

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

4V49|1|B0|U|1019

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_093 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1394

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V49|1|B0|U|1015
4V49|1|B0|C|1016
4V49|1|B0|C|1017
4V49|1|B0|C|1018
4V49|1|B0|U|1019
4V49|1|B0|A|1020
4V49|1|B0|A|1021
4V49|1|B0|A|1022
*
4V49|1|B0|U|1161
4V49|1|B0|A|1162

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S ribosomal protein L13

Chain BO

50S ribosomal protein L20