IL_4V49_106

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

4V49|1|B0|G|1345

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_106 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.3306

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V49|1|B0|G|1332
4V49|1|B0|G|1333
4V49|1|B0|A|1334
4V49|1|B0|A|1335
4V49|1|B0|G|1336
*
4V49|1|B0|C|1344
4V49|1|B0|G|1345
4V49|1|B0|C|1346

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S ribosomal protein L22