IL_4V49_136

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

4V49|1|B0|G|2217

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_136 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.1598

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

4V49|1|B0|U|2064
4V49|1|B0|A|2065
4V49|1|B0|G|2066
*
4V49|1|B0|C|2215
4V49|1|B0|G|2216
4V49|1|B0|G|2217
4V49|1|B0|G|2218

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BA

50S ribosomal protein L2

Chain BY

50S ribosomal protein L31