IL_4V49_145

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_145 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.3429

The information below is about IL_7A0S_087

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V49|1|B0|C|2445
4V49|1|B0|C|2446
4V49|1|B0|G|2447
4V49|1|B0|A|2448
4V49|1|B0|G|2449
*
4V49|1|B0|C|2459
4V49|1|B0|G|2460
4V49|1|B0|G|2461
4V49|1|B0|C|2462
4V49|1|B0|G|2463

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B4

50S ribosomal protein L36

Chain BK

50S ribosomal protein L16