IL_4V49_152

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_152 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.2841

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V49|1|B0|C|2631
4V49|1|B0|U|2632
4V49|1|B0|A|2633
4V49|1|B0|G|2634
4V49|1|B0|U|2635
4V49|1|B0|A|2636
4V49|1|B0|C|2637
*
4V49|1|B0|G|2642
4V49|1|B0|G|2643
4V49|1|B0|A|2644
4V49|1|B0|C|2645
4V49|1|B0|C|2646
4V49|1|B0|G|2647

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S ribosomal protein L6